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                ChromasPro | DNA测序和分析软件

                ChromasPro | DNA测序和分析软件
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                • ChromasPro | DNA测序和分析软件
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                产品报价: 5000
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                ChromasPro
                DNA测序和分析软件
                高教 职教
                详细说明

                温馨提示:需求数量不同,价格不同。请联系我们,确认当前新的报价!

                ChromasPro用于将序列读数组装成contigs。有一个图形contig编辑器,显示对齐的色谱图。它还可以进行一般的序列分析,如限制性酶图谱、开放读码框搜索和BLAST提交。

                ChromasPro适用于高达几兆的DNA序列组装项目,以及基本的序列编辑和分析。它能够组装来自Sanger测序仪(如ABI)和454和Illumina下一代测序仪的数据,如果有8GB内存的话,至多可组装1,000,000条序列。ChromasPro具有以下特点:

                • 以Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF和纯文本格式打开序列。

                • 以.ab1、.scf、.fasta和.fastq格式保存序列。

                • 使用图形界面组装重叠的序列,生成共识,并突出显示模棱两可的地方供编辑。

                • 使用质量数据自动去除低质量的序列,以提高序列组装。

                • 使用参考序列作为组装的支架。

                • 生成限制性位点和片段图,并列出切割、无切割和片段。

                • 在G+C框架图的帮助下,绘制开放阅读框架图,并一键翻译ORFs。

                • 打印色谱图、限制性位点和片段图以及开放阅读框架图。

                • 通过NCBI网站进行核苷酸和■蛋白质BLAST搜索。

                • 通过与ClustalW对接进行多重比对。

                • 反转和补充序列和色谱图。

                • 通过准确匹配或optimal排列搜索︻序列。

                • 在编辑核苷酸序列时显示翻译。

                • 进行反向翻译并绘制核苷酸退化图。

                • 绘制蛋白质的亲水性和抗原性。

                • 复制色谱图部分的图像,以便粘贴到文档或演示文稿中。

                系统要求:

                与Windows 7sP1,8,10兼容

                【英文介绍】

                ChromasPro is for assembly of sequence reads into contigs, with a graphical contig editor which displays aligned chromatograms. It also peforms general sequence analysis such as restriction enzyme mapping, open-reading-frame searches, and BLAST submission.

                ChromasPro is suitable for DNA sequence assembly projects up to a few megabases, and basic sequence editing and analysis. It is able to assemble data from Sanger sequencers such as ABI, and 454 and Illumina next-generation sequencers, with up to 1,000,000 sequences if 8 Gb RAM is available. ChromasPro has the following features:

                • Open sequences in Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF and plain text formats.

                • Save sequences in .ab1, .scf, .fasta and .fastq formats.

                • Assemble overlapping sequences using a graphical interface, generate a consensus and highlight ambiguities for editing.

                • Use quality data to automatically remove low quality sequence for improved sequence assembly.

                • Use a reference sequence as a scaffold for assembly.

                • Generate restriction site and fragment maps, and list cutters, non-cutters and fragments.

                • Map open reading frames, aided by a G+C frame plot, and translate ORFs with one click.

                • Print chromatograms, restriction site and fragment maps, and open reading frame maps.

                • Perform nucleotide and protein BLAST searches through the NCBI web site.

                • Perform multiple alignments by interfacing with ClustalW.

                • Reverse & complement sequences and chromatograms.

                • Search for sequences by exact matching or optimal alignment.

                • Display translations when editing nucleotide sequences.

                • Perform reverse translations and plot nucleotide degeneracy.

                • Plot hydrophilicity and antigenicity of proteins.

                • Copy an image of a chromatogram section for pasting into documents or presentations.

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